STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK23398.1Chromosome undetermined SCAF11636, whole genome shotgun sequence; Metallo-dependent phosphatases (SSF56300); SPERM PROTEIN HOMOLOG (PTHR12905). (99 aa)    
Predicted Functional Partners:
AEK23397.1
TraM; 1 transmembrane domain; Bac_Flav_CT_M: Bacteroides conjugative tran (TIGR03779); Protein of unknown function DUF3714 (PF12508).
       0.631
AEK23395.1
TraK.
       0.575
AEK23396.1
Hypothetical protein; N-terminus: SpI(SignalPHMM); 1 transmembrane domain.
       0.575
AEK24054.1
Putative glucuronosyltransferase; Weak similarity to UniProt:A5U6W6; GLYCOSYLTRANSFERASE (PTHR11926:SF2); UDP-glucuronosyl/UDP-glucosyltransferase (PTHR11926); UDP-Glycosyltransferase/glycogen phosphorylase (SSF53756); Undefined Gene3D domain (G3DSA:3.40.50.2000); Glycosyl transferase, family 28, C-terminal (PF04101); Protein involved in transferase activity, transferring hexosyl groups, carbohydrate binding, carbohydrate metabolic process, lipid glycosylation and metabolic process.
  
     0.465
AEK23394.1
Transposase, IS1 (PF03400); Insertion element protein (PF03811); Protein involved in DNA binding, transposase activity and transposition, DNA-mediated.
       0.408
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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