STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
priAReplication factor Y; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (816 aa)    
Predicted Functional Partners:
AEK23487.1
Putative ribonuclease-like protein yfkH; 6 transmembrane domains; Ribonuclease BN-related (PF03631); Protein involved in ribonuclease activity.
 
     0.866
AEK22249.1
Short=SSB;AltName: Full=Helix-destabilizing protein; Nucleic acid-binding, OB-fold (G3DSA:2.40.50.140); Primosome PriB/single-strand DNA-binding (PS50935); Single-strand DNA-binding (TIGR00621); Single-strand DNA-binding (PTHR10302); Primosome PriB/single-strand DNA-binding (PF00436); Nucleic acid-binding, OB-fold-like (SSF50249); Protein involved in single-stranded DNA binding and DNA replication.
  
 
 
 0.811
pheT
AltName: Full=Phenylalanine--tRNA ligase beta chain;Short=PheRS; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (G3DSA:3.30.70.380); tRNA synthetase, B5 (PF03484); Nucleic acid-binding, OB-fold (G3DSA:2.40.50.140); tRNA synthetase, B5 (G3DSA:3.30.56.20); Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (SSF54991); B3/B4 tRNA-binding domain (PF03483); Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial (TIGR00472); Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (PF03147); PHENYLALANYL [...]
 
  
 0.670
AEK23058.1
CoaB; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
 
    0.654
AEK22762.1
Conserved hypothetical protein; Protein of unknown function DUF3127 (PF11325).
    
 
 0.620
AEK24001.1
Single-stranded-DNA-specific exonuclease recJ; Phosphoesterase, DHHA1 (PF02272); Phosphoesterase, RecJ-like (PF01368); Bacterial RecJ exonuclease (TIGR00644); DHH phosphoesterases (SSF64182); Protein involved in 5'-3' exonuclease activity, hydrolase activity, manganese ion binding, nucleic acid binding, DNA repair and DNA recombination.
 
     0.582
AEK22947.1
Rma dnaB intein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
   
 0.576
AEK22206.1
Hypothetical protein.
  
    0.533
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
    0.533
AEK23488.1
Conserved hypothetical protein; N-terminus: TMH(LipoP); 1 transmembrane domain.
       0.515
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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