STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnztRNA 3 endonuclease; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (302 aa)    
Predicted Functional Partners:
pdxH
Pyridoxal 5'-phosphate synthase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.807
AEK23600.1
Hypothetical protein.
       0.773
pyrB
AltName: Full=Aspartate transcarbamylase;Short=ATCase; Undefined Gene3D domain (G3DSA:3.40.50.1370); Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (PF02729); Aspartate carbamoyltransferase, eukaryotic (TIGR00670); CARBAMOYLTRANSFERASE RELATED (PTHR11405); Aspartate carbamoyltransferase, eukaryotic (MF_00001); Aspartate/ornithine carbamoyltransferase (SSF53671); Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (PF00185); Aspartate/ornithine carbamoyltransferase (PS00097); Aspartate/ornithine carbamoyltransferase (PR00100); Aspartate carbamoyltransferase, [...]
       0.727
AEK23603.1
Uracil phosphoribosyltransferase; Includes:RecName: Full=Pyrimidine operon regulatory protein;Includes:RecName: Full=Uracil phosphoribosyltransferase;Short=UPRTase; PRTase-like (SSF53271); Phosphoribosyltransferase (PF00156); Undefined Gene3D domain (G3DSA:3.40.50.2020); Protein involved in nucleoside metabolic process.
       0.686
AEK23601.1
Ribonuclease Z.
       0.663
AEK23604.1
Hypothetical protein; Weak similarity to UniProt:Q02729; N-terminus: TMH(LipoP); 13 transmembrane domains; Tetratricopeptide-like helical (G3DSA:1.25.40.10); TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (PTHR23083); O-antigen ligase-related (PF04932); TPR-like (SSF48452); Tetratricopeptide repeat-containing (PS50293); Tetratricopeptide (SM00028); Protein involved in binding.
   
   0.633
ffh
Fifty-four-like protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.581
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.523
argS
AltName: Full=Arginine--tRNA ligase;Short=ArgRS; Aminoacyl-tRNA synthetase, class I, conserved site (PS00178); Legume lectin, beta chain, Mn/Ca-binding site (PS00307); Arginyl-tRNA synthetase, class Ic (MF_00123); Arginyl-tRNA synthetase, class Ic (TIGR00456); Undefined Gene3D domain (G3DSA:1.10.730.10); Arginyl-tRNA synthetase, class Ic, core (PR01038); Rossmann-like alpha/beta/alpha sandwich fold (G3DSA:3.40.50.620); Arginyl tRNA synthetase, class Ic, N-terminal (PF03485); Arginyl-tRNA synthetase, class Ic, core (PF00750); Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (SSF47 [...]
  
  
 0.491
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
   
 0.464
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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