STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflXGTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (408 aa)    
Predicted Functional Partners:
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.896
rpmF
Ribosomal protein L32p (PF01783); Ribosomal protein L32p (MF_00340); Ribosomal protein L32p (TIGR01031); Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL32 family.
    
 
 0.871
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.863
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.861
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.861
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
    
 
 0.859
AEK22538.1
Ribosomal protein L27 (PR00063); Ribosomal protein L27 (PTHR15893); Ribosomal protein L27 (SSF110324); Ribosomal protein L27 (PD003114); Ribosomal protein L27, conserved site (PS00831); Ribosomal protein L27 (PF01016); Protein involved in structural constituent of ribosome and translation.
   
   0.858
rplQ
Ribosomal protein L17 (MF_01368); Ribosomal protein L17 (G3DSA:3.90.1030.10); RIBOSOMAL PROTEIN L17 (PTHR14413:SF3); Ribosomal protein L17 (PF01196); Ribosomal protein L17 (PS01167); Ribosomal protein L17 (TIGR00059); Ribosomal protein L17 (PTHR14413); Ribosomal protein L17 (SSF64263); Protein involved in structural constituent of ribosome and translation.
    
   0.858
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.858
rpmG
Ribosomal protein L33 (PF00471); Ribosomal protein L33 (TIGR01023); Ribosomal protein L33 (MF_00294); Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.858
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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