STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK24342.1Locus: Belongs to PUL_12; Conserved hypothetical protein CHP02436 (TIGR02436); Ribosomal_S23p (PF05635). (120 aa)    
Predicted Functional Partners:
AEK24341.1
Hypothetical protein; N-terminus: SpI(LipoP); Locus: Belongs to PUL_12; Glycoside hydrolase 97 (PF10566); Glycoside hydrolase, catalytic core (SSF51445).
       0.434
AEK24343.1
Bla; N-terminus: SpII(LipoP); Locus: Belongs to PUL_12; AltName: Full=1,4-alpha-D-glucan glucanohydrolase;AltName: Full=BLA;Flags: Precursor; Alpha-amylase C-terminal, prokaryotic (PF09154); ALPHA-AMYLASE (PTHR10357:SF9); Glycosyl hydrolase, family 13, catalytic domain (PF00128); Glycoside hydrolase family 13 (PR00110); Glycoside hydrolase, subgroup, catalytic core (G3DSA:3.20.20.80); AMYLASE (PTHR10357); Glycoside hydrolase, catalytic core (SSF51445); Protein involved in catalytic activity, cation binding and carbohydrate metabolic process.
       0.417
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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