STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEK24522.1Uncharacterized protein yusI; Arsenate reductase-like (PF03960); Arsenate reductase-like (PS51353); Thioredoxin fold (G3DSA:3.40.30.10); Thioredoxin-like fold (SSF52833); Belongs to the ArsC family. (118 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
AEK23237.1
Sigma-43; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.572
rpoC
RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.570
AEK24523.1
Uncharacterized protein yjeA; N-terminus: SpII(LipoP); Flags: Precursor; Domain of unknown function DUF3298 (PF11738).
       0.488
AEK23223.1
Probable phenylacetic acid degradation NADH oxidoreductase paaE; Ferredoxin reductase-type FAD-binding domain (PS51384); Flavoprotein pyridine nucleotide cytochrome reductase (PR00371); FLAVOHEMOPROTEIN B5/B5R (PTHR19370:SF1); Riboflavin synthase-like beta-barrel (SSF63380); Oxidoreductase, FAD-binding domain (PF00970); 2Fe-2S ferredoxin, iron-sulphur binding site (PS00197); Ferredoxin reductase-like, C-terminal NADP-linked domain (SSF52343); Undefined Gene3D domain (G3DSA:3.40.50.80); Undefined Gene3D domain (G3DSA:2.40.30.10); NADH:cytochrome b5 reductase (CBR) (PR00406); Beta-grasp [...]
    
 
 0.438
AEK23325.1
Conserved hypothetical protein; N-terminus: TMH(LipoP); 6 transmembrane domains.
  
    0.436
AEK22297.1
Hypothetical protein.
 
 
   0.434
msrA-2
Peptide-methionine (R)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.434
AEK24524.1
Iron-dependent repressor ideR; Undefined Gene3D domain (G3DSA:1.10.60.10); Iron dependent repressor (SSF47979); Transcriptional repressor, C-terminal (SSF50037); Iron dependent repressor (PF01325); Iron dependent repressor (SM00529); Iron dependent repressor (PF02742); Winged helix DNA-binding domain (SSF46785); Iron dependent repressor (PS50944); Protein involved in transcription factor activity, iron ion binding and regulation of transcription, DNA-dependent.
       0.433
AEK23059.1
Conserved hypothetical protein; RNA polymerase Rpb6 (PF01192); Protein involved in DNA binding, DNA-directed RNA polymerase activity and transcription, DNA-dependent.
   
   0.422
Your Current Organism:
Capnocytophaga canimorsus
NCBI taxonomy Id: 860228
Other names: C. canimorsus Cc5, Capnocytophaga canimorsus Cc5, Capnocytophaga canimorsus str. Cc5, Capnocytophaga canimorsus strain Cc5
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