ALG10293.1 protein (Kibdelosporangium phytohabitans)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

ALG10293.1

AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)

Predicted Functional Partners:

ALG10294.1

0.693

ALG11205.1

0.578

ALG11767.1

0.499

ALG15426.1

0.488

ALG08553.1

0.485

ALG12568.1

0.484

ALG08261.1

0.483

ALG12569.1

0.448

Your Current Organism:

Kibdelosporangium phytohabitans

NCBI taxonomy Id: 860235
Other names: CCTCC AA 2010001, K. phytohabitans, KCTC 19775, Kibdelosporangium phytohabitans Xing et al. 2012

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG08261.1	ALG10293.1	AOZ06_16280	AOZ06_28385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ALG08261.1	ALG10294.1	AOZ06_16280	AOZ06_28390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
ALG08553.1	ALG10293.1	AOZ06_17980	AOZ06_28385	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ALG08553.1	ALG11767.1	AOZ06_17980	AOZ06_37205	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ALG08553.1	ALG15426.1	AOZ06_17980	AOZ06_39890	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
ALG10293.1	ALG08261.1	AOZ06_28385	AOZ06_16280	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ALG10293.1	ALG08553.1	AOZ06_28385	AOZ06_17980	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ALG10293.1	ALG10294.1	AOZ06_28385	AOZ06_28390	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
ALG10293.1	ALG11205.1	AOZ06_28385	AOZ06_33860	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
ALG10293.1	ALG11767.1	AOZ06_28385	AOZ06_37205	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
ALG10293.1	ALG12568.1	AOZ06_28385	AOZ06_42030	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ALG10293.1	ALG12569.1	AOZ06_28385	AOZ06_42035	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
ALG10293.1	ALG15426.1	AOZ06_28385	AOZ06_39890	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
ALG10294.1	ALG08261.1	AOZ06_28390	AOZ06_16280	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
ALG10294.1	ALG10293.1	AOZ06_28390	AOZ06_28385	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
ALG10294.1	ALG12568.1	AOZ06_28390	AOZ06_42030	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
ALG10294.1	ALG12569.1	AOZ06_28390	AOZ06_42035	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALG11205.1	ALG10293.1	AOZ06_33860	AOZ06_28385	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
ALG11767.1	ALG08553.1	AOZ06_37205	AOZ06_17980	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ALG11767.1	ALG10293.1	AOZ06_37205	AOZ06_28385	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

13

average node degree:

2.36

avg. local clustering coefficient:

0.855

expected number of edges:

11

PPI enrichment p-value:

0.263

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006352

DNA-templated transcription, initiation

5 of 25

1.83

2.2

1.35e-05

GO:0006281

DNA repair

4 of 60

1.35

1.15

0.0011

GO:0034654

Nucleobase-containing compound biosynthetic process

6 of 152

1.13

1.07

0.00024

GO:0090304

Nucleic acid metabolic process

9 of 316

0.98

1.02

1.35e-05

GO:0009059

Macromolecule biosynthetic process

6 of 256

0.9

0.73

0.0015

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016987

Sigma factor activity

5 of 25

1.83

2.3

7.03e-06

GO:0003700

DNA-binding transcription factor activity

6 of 75

1.43

1.72

1.22e-05

GO:0003677

DNA binding

7 of 267

0.95

0.84

0.00045

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5222

Oxoglutarate/iron-dependent dioxygenase, and methylated-DNA-[protein]-cysteine S-methyltransferase activity

3 of 5

2.31

1.63

0.00086

CL:5180

Mixed, incl. LysR, substrate-binding, and Pirin

4 of 35

1.59

1.29

0.0013

CL:2233

Mixed, incl. Sigma-70 factor, region 1.2, and Smr domain

2 of 6

2.05

0.78

0.0357

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000428

DNA-directed RNA polymerase complex

5 of 47

1.56

1.72

5.40e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0731

Sigma factor

4 of 23

1.77

1.88

7.09e-05

KW-0238

DNA-binding

7 of 150

1.2

1.36

1.20e-05

KW-0805

Transcription regulation

5 of 104

1.21

1.1

0.00053

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04545

Sigma-70, region 4

5 of 10

2.23

3.41

1.19e-07

PF00140

Sigma-70 factor, region 1.2

3 of 3

2.53

2.15

9.92e-05

PF04542

Sigma-70 region 2

4 of 20

1.83

1.87

9.92e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR007630

RNA polymerase sigma-70 region 4

5 of 6

2.45

3.76

4.83e-08

IPR000943

RNA polymerase sigma-70

5 of 6

2.45

3.76

4.83e-08

IPR014284

RNA polymerase sigma-70 like domain

5 of 22

1.89

2.51

2.75e-06

IPR013324

RNA polymerase sigma factor, region 3/4-like

5 of 22

1.89

2.51

2.75e-06

IPR009042

RNA polymerase sigma-70 region 1.2

3 of 3

2.53

2.15

0.00010

(more ...)

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