ALG10525.1 protein (Kibdelosporangium phytohabitans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALG10525.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)

Predicted Functional Partners:

ALG10526.1

0.948

ALG12094.1

0.594

ALG06296.1

0.588

ALG10041.1

0.536

ALG09104.1

0.513

ALG07007.1

0.512

ALG07865.1

0.503

ALG10527.1

0.493

gabD2

0.482

ALG10555.1

0.481

Your Current Organism:

Kibdelosporangium phytohabitans

NCBI taxonomy Id: 860235
Other names: CCTCC AA 2010001, K. phytohabitans, KCTC 19775, Kibdelosporangium phytohabitans Xing et al. 2012

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG06296.1	ALG07007.1	AOZ06_04580	AOZ06_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ALG06296.1	ALG09104.1	AOZ06_04580	AOZ06_21235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALG06296.1	ALG10041.1	AOZ06_04580	AOZ06_26900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
ALG06296.1	ALG10525.1	AOZ06_04580	AOZ06_29780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
ALG06296.1	ALG10526.1	AOZ06_04580	AOZ06_29785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
ALG06296.1	ALG10555.1	AOZ06_04580	AOZ06_29935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ALG07007.1	ALG06296.1	AOZ06_08765	AOZ06_04580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ALG07007.1	ALG10041.1	AOZ06_08765	AOZ06_26900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALG07007.1	ALG10525.1	AOZ06_08765	AOZ06_29780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
ALG07007.1	ALG12094.1	AOZ06_08765	AOZ06_39175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
ALG07865.1	ALG09104.1	AOZ06_13920	AOZ06_21235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALG07865.1	ALG10525.1	AOZ06_13920	AOZ06_29780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
ALG07865.1	ALG10526.1	AOZ06_13920	AOZ06_29785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ALG09104.1	ALG06296.1	AOZ06_21235	AOZ06_04580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALG09104.1	ALG07865.1	AOZ06_21235	AOZ06_13920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALG09104.1	ALG10525.1	AOZ06_21235	AOZ06_29780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
ALG09104.1	ALG12094.1	AOZ06_21235	AOZ06_39175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ALG10041.1	ALG06296.1	AOZ06_26900	AOZ06_04580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
ALG10041.1	ALG07007.1	AOZ06_26900	AOZ06_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALG10041.1	ALG10525.1	AOZ06_26900	AOZ06_29780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536

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Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.915

expected number of edges:

11

PPI enrichment p-value:

5.85e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006865

Amino acid transport

9 of 144

1.5

2.62

6.05e-10

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0022857

Transmembrane transporter activity

11 of 607

0.96

1.13

2.80e-08

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0043190

ATP-binding cassette (ABC) transporter complex

9 of 106

1.63

3.37

4.70e-12

GO:0005886

Plasma membrane

11 of 1039

0.72

2.32e-07

GO:0016021

Integral component of membrane

10 of 1219

0.61

0.54

4.19e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9100