ALG10848.1 protein (Kibdelosporangium phytohabitans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

ALG10848.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)

Predicted Functional Partners:

ALG10847.1

0.820

ALG12222.1

0.467

ALG06767.1

0.418

ALG11332.1

0.418

AOZ06_31710

0.412

Your Current Organism:

Kibdelosporangium phytohabitans

NCBI taxonomy Id: 860235
Other names: CCTCC AA 2010001, K. phytohabitans, KCTC 19775, Kibdelosporangium phytohabitans Xing et al. 2012

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG06767.1	ALG10848.1	AOZ06_07365	AOZ06_31720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALG10847.1	ALG10848.1	AOZ06_31715	AOZ06_31720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
ALG10847.1	AOZ06_31710	AOZ06_31715	AOZ06_31710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
ALG10848.1	ALG06767.1	AOZ06_31720	AOZ06_07365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALG10848.1	ALG10847.1	AOZ06_31720	AOZ06_31715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
ALG10848.1	ALG11332.1	AOZ06_31720	AOZ06_34645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALG10848.1	ALG12222.1	AOZ06_31720	AOZ06_39980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ALG10848.1	AOZ06_31710	AOZ06_31720	AOZ06_31710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ALG11332.1	ALG10848.1	AOZ06_34645	AOZ06_31720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALG12222.1	ALG10848.1	AOZ06_39980	AOZ06_31720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AOZ06_31710	ALG10847.1	AOZ06_31710	AOZ06_31715	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
AOZ06_31710	ALG10848.1	AOZ06_31710	AOZ06_31720	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

15

PPI enrichment p-value:

4.44e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044781

Bacterial-type flagellum organization

4 of 17

1.88

1.66

0.00038

GO:0097588

Archaeal or bacterial-type flagellum-dependent cell motility

4 of 32

1.61

1.32

0.0012

GO:0009306

Protein secretion

4 of 35

1.57

1.29

0.0012

GO:0071973

Bacterial-type flagellum-dependent cell motility

3 of 22

1.64

1.1

0.0050

GO:0006935

Chemotaxis

3 of 22

1.64

1.1

0.0050

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003774

Cytoskeletal motor activity

5 of 7

2.36

3.68

5.44e-08

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009288

Bacterial-type flagellum

7 of 27

1.92

3.94

1.72e-10

GO:0009425

Bacterial-type flagellum basal body

5 of 20

1.91

2.91

2.39e-07

GO:0005886

Plasma membrane

7 of 634

0.55

0.36

0.0238

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1651

Bacterial-type flagellum basal body, and Bacterial flagellum biogenesis

11 of 21

2.23

8.18

3.52e-21

CL:1682

Cytoskeletal motor activity

5 of 5

2.51

4.49

1.76e-09

CL:1653

Bacterial-type flagellum basal body, and Bacterial flagellum biogenesis

5 of 14

2.06

3.31

7.37e-08

CL:1656

Bacterial-type flagellum basal body, distal rod, and Flagellar basal body rod protein, conserved site

2 of 7

1.97

0.9

0.0191

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02040

Flagellar assembly

11 of 42

1.93

6.01

3.36e-19

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009288

Bacterial-type flagellum

9 of 31

1.97

5.19

1.78e-14

GOCC:0009425

Bacterial-type flagellum basal body

7 of 20

2.05

4.56

2.03e-11

GOCC:0030257

Type III protein secretion system complex

2 of 2

2.51

1.4

0.0027

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0282

Flagellum

8 of 21

2.09

5.28

2.28e-13

KW-1005

Bacterial flagellum biogenesis

4 of 4

2.51

3.52

1.81e-07

KW-1006

Bacterial flagellum protein export

3 of 3

2.51

2.52

1.84e-05

KW-0283

Flagellar rotation

3 of 5

2.29

2.27

4.29e-05

KW-0145

Chemotaxis

3 of 7

2.14

2.09

7.85e-05

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01052

Type III flagellar switch regulator (C-ring) FliN C-term

2 of 2

2.51

0.85

0.0285

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