STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yclCPhenolic acid decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. (473 aa)    
Predicted Functional Partners:
yclB
Phenolic acid decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.
 
 
 0.999
AMK71011.1
Phenolic acid decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
dhaS
Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
      
 0.745
yhcX
Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.727
yclA
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
 
   
 0.615
pyrK
Dihydroorotate dehydrogenase; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
    0.587
menG
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
  
 0.532
padC
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.507
patB
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.443
Your Current Organism:
Bacillus subtilis natto
NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto
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