STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lplAHypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
lplB
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
lplC
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
ytcP
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.972
AMK73415.1
Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
ytcQ
AraC family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.914
yesO
Two-component system response regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.775
yhfJ
Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.761
yesW
Rhamnogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.754
yckB
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
   
  
 0.747
ywfL
octanoyl-[GcvH]:protein N-octanoyltransferase; Catalyzes the amidotransfer (transamidation) of the octanoyl moiety from octanoyl-GcvH to the lipoyl domain of the E2 subunit of lipoate-dependent enzymes; Belongs to the octanoyltransferase LipL family.
      
 0.746
Your Current Organism:
Bacillus subtilis natto
NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.