STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xtrAPhage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
xkdD
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.948
xkdB
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.933
AMK71885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.894
AMK71886.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.792
AMK71887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
xpf
Fis family transcriptional regulator; Positive regulatory protein that acts at the late promoter PL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.760
AMK71883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.622
xtmB
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
xtmA
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.535
xkdE
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.476
Your Current Organism:
Bacillus subtilis natto
NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.