STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDPeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (335 aa)    
Predicted Functional Partners:
dppB
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
dppC
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
dppE
Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
appC
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.985
oppC
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
dppA
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.918
appB
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.895
oppB
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.892
ykfD
Peptide ABC transporter ATP-binding protein; With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.798
ykfC
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.792
Your Current Organism:
Bacillus subtilis natto
NCBI taxonomy Id: 86029
Other names: B. subtilis subsp. natto, Bacillus subtilis subsp. natto, Bacillus subtilis var. natto
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.