STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_06149Uncharacterized protein. (298 aa)    
Predicted Functional Partners:
utp7
Putative U3 small nucleolar RNA-associated protein 7.
   
   0.853
mak16
Protein MAK16; Belongs to the MAK16 family.
   
   0.838
CLCR_07113
rRNA 2'-O-methyltransferase fibrillarin.
   
   0.819
CLCR_08436
Uncharacterized protein.
   
   0.817
sgd1
Suppressor of glycerol defect protein 1.
   
   0.792
CLCR_00419
Uncharacterized protein.
  
   0.737
CLCR_03422
60S ribosome biogenesis protein Rrp14.
   
 
 0.723
sda1
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
   0.642
CLCR_05398
CBF domain-containing protein.
   
   0.628
NOP4
Nucleolar protein 4.
   
   0.621
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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