STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_00677Uncharacterized protein. (334 aa)    
Predicted Functional Partners:
CLCR_01960
5-Methylcytosine G/T mismatch-specific DNA glycosylase.
     
 0.589
CLCR_03331
R3H and G-patch domain-containing protein.
    
 0.509
CLCR_09848
Putative G-patch domain protein.
    
 0.509
CLCR_10872
Uncharacterized protein.
    
 0.509
CLCR_07243
Peptide-methionine (S)-S-oxide reductase.
   
 
 0.493
CLCR_10742
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 
 0.482
CLCR_07929
Putative PAB1 binding protein (Pbp1).
    
 
 0.424
CLCR_01423
Pumilio-family RNA binding repeat protein.
   
 
 0.420
CLCR_02749
PUM-HD domain-containing protein.
   
 
 0.420
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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