STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_05691Uncharacterized protein. (595 aa)    
Predicted Functional Partners:
Cdc40
Pre-mRNA-processing factor 17.
    
 0.836
cwf8
Pre-mRNA-splicing factor cwf8.
    
 0.827
prp45
Pre-mRNA-processing protein 45.
    
 0.826
syf1
Pre-mRNA-splicing factor syf1.
    
 0.823
CLCR_06546
RanBD1 domain-containing protein.
   
 0.814
CLCR_07959
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.814
GSP1
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.812
CLCR_07703
Protein BUD31 like protein.
    
  0.812
CLCR_07902
Putative nucleoporin.
   
 0.801
CLCR_09677
Tryptophan synthase.
   
 
 0.791
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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