STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)    
Predicted Functional Partners:
nop58
Nucleolar protein 58.
   
 0.999
CLCR_07113
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.999
nop56
Nucleolar protein 56.
   
 0.999
CLCR_00818
Putative WD repeat-containing protein C2E1P5.05.
   
 0.999
utp15
U3 small nucleolar RNA-associated protein 15.
   
 0.998
rps6b
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.998
CLCR_00708
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.996
prp3
U4/U5/U6 small nuclear ribonucleoprotein prp3.
    
 0.996
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.996
Prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.996
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.