CLCR_05373 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_05373

F-box domain-containing protein. (1213 aa)

Predicted Functional Partners:

OLE1

0.900

CLCR_10534

0.741

SLD

0.668

CLCR_06639

0.620

CLCR_01190

0.570

CLCR_00369

0.543

SCS7

0.502

hprA

0.499

CTBP1

0.499

CLCR_01880

0.487

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00369	CLCR_01880	A0A1C1CBU9	A0A1C1CDW0	Uncharacterized protein.	Uncharacterized protein.	0.448
CLCR_00369	CLCR_05373	A0A1C1CBU9	A0A1C1C769	Uncharacterized protein.	F-box domain-containing protein.	0.543
CLCR_01190	CLCR_05373	A0A1C1CCP2	A0A1C1C769	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	F-box domain-containing protein.	0.570
CLCR_01190	OLE1	A0A1C1CCP2	A0A1C1CQS6	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.513
CLCR_01190	SLD	A0A1C1CCP2	A0A1C1CWN4	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Delta(8)-fatty-acid desaturase.	0.534
CLCR_01880	CLCR_00369	A0A1C1CDW0	A0A1C1CBU9	Uncharacterized protein.	Uncharacterized protein.	0.448
CLCR_01880	CLCR_05373	A0A1C1CDW0	A0A1C1C769	Uncharacterized protein.	F-box domain-containing protein.	0.487
CLCR_05373	CLCR_00369	A0A1C1C769	A0A1C1CBU9	F-box domain-containing protein.	Uncharacterized protein.	0.543
CLCR_05373	CLCR_01190	A0A1C1C769	A0A1C1CCP2	F-box domain-containing protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.570
CLCR_05373	CLCR_01880	A0A1C1C769	A0A1C1CDW0	F-box domain-containing protein.	Uncharacterized protein.	0.487
CLCR_05373	CLCR_06639	A0A1C1C769	A0A1C1CNY6	F-box domain-containing protein.	Elongation of fatty acids protein.	0.620
CLCR_05373	CLCR_10534	A0A1C1C769	A0A1C1CXR9	F-box domain-containing protein.	Putative enoyl reductase.	0.741
CLCR_05373	CTBP1	A0A1C1C769	A0A1C1CVR6	F-box domain-containing protein.	C-terminal-binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.499
CLCR_05373	OLE1	A0A1C1C769	A0A1C1CQS6	F-box domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.900
CLCR_05373	SCS7	A0A1C1C769	A0A1C1CP66	F-box domain-containing protein.	Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily.	0.502
CLCR_05373	SLD	A0A1C1C769	A0A1C1CWN4	F-box domain-containing protein.	Delta(8)-fatty-acid desaturase.	0.668
CLCR_05373	hprA	A0A1C1C769	A0A1C1CUJ9	F-box domain-containing protein.	Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.499
CLCR_06639	CLCR_05373	A0A1C1CNY6	A0A1C1C769	Elongation of fatty acids protein.	F-box domain-containing protein.	0.620
CLCR_06639	CLCR_10534	A0A1C1CNY6	A0A1C1CXR9	Elongation of fatty acids protein.	Putative enoyl reductase.	0.848
CLCR_06639	OLE1	A0A1C1CNY6	A0A1C1CQS6	Elongation of fatty acids protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.904