STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDA1Histone deacetylase HDA1. (491 aa)    
Predicted Functional Partners:
CLCR_09916
Stress response regulator/HFS transcription factor.
    
 0.984
CLCR_10137
Putative RNA polymerase-associated protein LEO1.
    
 0.983
hat2
Histone acetyltransferase type B subunit 2.
   
 0.909
CLCR_05803
Uncharacterized protein.
 
      0.900
CLCR_00177
Deacetylase complex subunit Sds3.
    
 0.879
htb1
Histone H2B; Belongs to the histone H2B family.
    
 0.844
CLCR_01960
5-Methylcytosine G/T mismatch-specific DNA glycosylase.
    
 0.841
hta1
Histone H2A; Belongs to the histone H2A family.
    
 0.824
CLCR_02912
Uncharacterized protein.
    
 0.788
RPD3
Histone deacetylase RPD3.
  
 
0.787
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.