STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fip1Pre-mRNA polyadenylation factor fip1. (328 aa)    
Predicted Functional Partners:
yth1
mRNA 3'-end-processing protein yth1.
    
 0.999
CLCR_04607
mRNA cleavage and polyadenylation specificity factor complex subunit.
    
 0.999
CLCR_06624
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.999
CFT1
Protein CFT1.
   
 0.999
pfs2
Polyadenylation factor subunit 2.
   
 0.999
CLCR_00799
Uncharacterized protein.
    
 0.998
rna14
mRNA 3'-end-processing protein rna14.
   
 0.997
PAP1
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.996
CLCR_06015
Putative WD repeat-containing protein.
   
 0.994
CLCR_03925
Retinoblastoma-binding protein.
    
 0.993
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.