CLCR_06338 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_06338

Putative RNA-binding protein EIF1AD. (195 aa)

Predicted Functional Partners:

rio1

0.932

rps30a

0.845

RPS18

0.836

RPS15

0.836

FRS1

0.708

CLCR_01230

0.703

RPS16B

0.700

rps23

0.689

RPS9

0.678

nob1

0.677

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_01230	CLCR_06338	A0A1C1CD68	A0A1C1C876	Guanine nucleotide-binding protein subunit beta-like protein.	Putative RNA-binding protein EIF1AD.	0.703
CLCR_01230	FRS1	A0A1C1CD68	A0A1C1CBP7	Guanine nucleotide-binding protein subunit beta-like protein.	Phenylalanine--tRNA ligase beta subunit.	0.662
CLCR_01230	RPS15	A0A1C1CD68	A0A1C1D061	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.998
CLCR_01230	RPS16B	A0A1C1CD68	A0A1C1CRR3	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family.	0.998
CLCR_01230	RPS18	A0A1C1CD68	A0A1C1CG71	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.998
CLCR_01230	RPS9	A0A1C1CD68	A0A1C1CYR4	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.998
CLCR_01230	nob1	A0A1C1CD68	A0A1C1CVW6	Guanine nucleotide-binding protein subunit beta-like protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.923
CLCR_01230	rio1	A0A1C1CD68	A0A1C1CII8	Guanine nucleotide-binding protein subunit beta-like protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.774
CLCR_01230	rps23	A0A1C1CD68	A0A1C1CQ06	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
CLCR_01230	rps30a	A0A1C1CD68	A0A1C1D2F8	Guanine nucleotide-binding protein subunit beta-like protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
CLCR_06338	CLCR_01230	A0A1C1C876	A0A1C1CD68	Putative RNA-binding protein EIF1AD.	Guanine nucleotide-binding protein subunit beta-like protein.	0.703
CLCR_06338	FRS1	A0A1C1C876	A0A1C1CBP7	Putative RNA-binding protein EIF1AD.	Phenylalanine--tRNA ligase beta subunit.	0.708
CLCR_06338	RPS15	A0A1C1C876	A0A1C1D061	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.836
CLCR_06338	RPS16B	A0A1C1C876	A0A1C1CRR3	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family.	0.700
CLCR_06338	RPS18	A0A1C1C876	A0A1C1CG71	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.836
CLCR_06338	RPS9	A0A1C1C876	A0A1C1CYR4	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.678
CLCR_06338	nob1	A0A1C1C876	A0A1C1CVW6	Putative RNA-binding protein EIF1AD.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.677
CLCR_06338	rio1	A0A1C1C876	A0A1C1CII8	Putative RNA-binding protein EIF1AD.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.932
CLCR_06338	rps23	A0A1C1C876	A0A1C1CQ06	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.689
CLCR_06338	rps30a	A0A1C1C876	A0A1C1D2F8	Putative RNA-binding protein EIF1AD.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.845