STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_06338Putative RNA-binding protein EIF1AD. (195 aa)    
Predicted Functional Partners:
rio1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
 
 0.932
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.845
RPS18
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
    
   0.836
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
   0.836
FRS1
Phenylalanine--tRNA ligase beta subunit.
   
 
 0.708
CLCR_01230
Guanine nucleotide-binding protein subunit beta-like protein.
    
   0.703
RPS16B
40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family.
    
   0.700
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.689
RPS9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.678
nob1
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 
 0.677
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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