STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfg3Transcription initiation factor TFIID subunit 14. (250 aa)    
Predicted Functional Partners:
CLCR_03920
Uncharacterized protein.
    
 0.977
CLCR_08620
Transcription initiation factor IIF, beta subunit family protein.
   
 0.977
rpb3
DNA-directed RNA polymerase II subunit RPB3.
   
 0.958
RPB2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.947
tbpA
TATA-box-binding protein.
    
 
 0.937
RPB5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.932
rpb4
DNA-directed RNA polymerase II subunit rpb4.
   
 0.930
taf2
Transcription initiation factor TFIID subunit 2.
    
 
 0.928
CLCR_10471
Bromodomain associated DNA binding protein.
    
 
 0.921
CLCR_01997
RNA_pol_L_2 domain-containing protein.
   
 0.920
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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