STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_06271Histone-like transcription factor and archaeal histone family protein. (197 aa)    
Predicted Functional Partners:
CLCR_07230
DNA polymerase epsilon subunit 3.
    
 0.989
CLCR_04916
CBFD_NFYB_HMF domain-containing protein.
   
 0.983
CLCR_05025
Protein HAPB.
    
 0.982
pol2
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.835
CLCR_03862
Putative DNA polymerase epsilon subunit B.
     
 0.797
CLCR_01554
BZIP transcription factor HapX.
    
 
 0.653
CLCR_08074
Uncharacterized protein.
    
 
 0.653
myo2
Myosin type-2 heavy chain 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.653
ISW2
ISWI chromatin-remodeling complex ATPase ISW2.
    
 
 0.652
Hells
Lymphocyte-specific helicase.
    
 
 0.652
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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