STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP43Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (765 aa)    
Predicted Functional Partners:
lea1
U2 small nuclear ribonucleoprotein A.
   
 0.999
CLCR_08400
G-patch domain containing protein.
 
 
 0.999
Cdc40
Pre-mRNA-processing factor 17.
    
 0.995
SAS10
Something about silencing protein 10.
   
 0.994
CLCR_11432
G-patch domain-containing protein.
   
 0.994
PRP5
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.993
ini1
Pre-mRNA-splicing factor ini1.
   
 0.992
CLCR_04583
Uncharacterized protein.
   
 0.991
prh1
Putative ATP-dependent RNA helicase prh1.
  
0.991
CLCR_10047
CID domain-containing protein.
   
 0.989
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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