STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_05974Putative protease inhibitor (Tfs1). (266 aa)    
Predicted Functional Partners:
RML2
54S ribosomal protein RML2, mitochondrial.
   
   0.796
CLCR_03542
Mitochondrial 37S ribosomal protein MRP4.
   
 
 0.785
CLCR_00444
Putative mitochondrial ribosomal protein DAP3.
   
 
 0.783
CLCR_02576
Uncharacterized protein.
   
 
 0.778
MRPS5
37S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family.
   
   0.775
CLCR_02540
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
   
   0.769
mrpl3
54S ribosomal protein L3, mitochondrial.
   
 
 0.767
yml6
54S ribosomal protein yml6, mitochondrial.
   
 
 0.765
CLCR_01698
Mitochondrial 54S ribosomal protein IMG1.
   
 
 0.758
MRPL23
54S ribosomal protein L23, mitochondrial.
   
 
 0.757
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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