STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01375Nup188_C domain-containing protein. (1828 aa)    
Predicted Functional Partners:
CLCR_07935
Nuclear pore complex protein An-Nic96.
   
 0.995
CLCR_00543
Peptidase S59 domain-containing protein.
   
 0.985
CLCR_05344
Nuclear pore complex protein.
  
 0.976
CLCR_07902
Putative nucleoporin.
   
 0.968
CLCR_10184
Putative Nucleoporin.
    
 0.967
CLCR_07906
Putative nuclear pore complex subunit Nup133.
  
 0.962
CLCR_07959
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.934
SEC13
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.923
rae1
Poly(A)+ RNA export protein.
    
 0.917
CLCR_09436
Nuclear pore complex protein.
  
 
 
 0.889
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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