STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFD1Ubiquitin fusion degradation protein 1. (310 aa)    
Predicted Functional Partners:
NPL4
Nuclear protein localization protein 4.
   
 0.999
ubx2
UBX domain-containing protein 2.
    
 0.987
cdc48
Cell division control protein 48; Belongs to the AAA ATPase family.
    
 0.978
CLCR_10117
ATP-dependent Zn protease.
    
 0.978
UBI4
Polyubiquitin.
   
 0.975
lub1
Ubiquitin homeostasis protein lub1.
   
 
 0.974
otu1
Putative ubiquitin thioesterase otu1.
   
 
 0.974
CLCR_07218
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.971
ufd2
Ubiquitin conjugation factor E4.
    
 
 0.971
CLCR_03096
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.971
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.