STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01609Uncharacterized protein. (353 aa)    
Predicted Functional Partners:
CLCR_02722
GRAM domain protein.
    
  0.761
CLCR_08151
Uncharacterized protein.
   
 0.759
CLCR_10586
Uncharacterized protein.
   
 0.555
asa1
ASTRA-associated protein 1.
    
  0.535
taf5
Transcription initiation factor TFIID subunit 5.
    
  0.535
CLCR_11286
WD domain-containing protein.
    
  0.535
creC
Catabolite repression protein creC.
    
  0.535
slp1
WD repeat-containing protein slp1.
    
  0.535
CLCR_08412
WD domain, G-beta repeat containing protein.
    
  0.535
CLCR_10061
F-box domain-containing protein.
    
  0.535
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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