STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_00532Uncharacterized protein. (139 aa)    
Predicted Functional Partners:
Fntb
Protein farnesyltransferase subunit beta.
    
 0.982
CLCR_00514
Protein farnesyltransferase alpha subunit.
 
     0.938
CLCR_00881
Geranylgeranyl transferase beta subunit.
    
 0.913
CLCR_01002
Uncharacterized protein.
    
 0.913
STE24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.825
CLCR_01587
Putative CAAX prenyl protease 2.
     
 0.822
CLCR_04176
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.804
fpp
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.803
GGS
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.791
CLCR_01936
Putative squalene synthase.
     
 0.783
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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