STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_00353ABC a-pheromone efflux pump AtrD. (1412 aa)    
Predicted Functional Partners:
YPL225W
Protein PBDC1 like protein.
 
      0.856
cut6
Acetyl-CoA carboxylase.
   
 0.660
end4
Endocytosis protein end4.
    
 0.605
pep
Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.
   
 0.575
rpn11
26S proteasome regulatory subunit rpn11.
    
  0.558
atm1
Iron-sulfur clusters transporter atm1, mitochondrial.
    
0.535
CLCR_01417
Ubiquitin carboxyl-terminal hydrolase.
    
  0.532
CLCR_06661
Ubiquitin C-terminal hydrolase family protein.
    
  0.532
CLCR_01541
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 0.526
apm2
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
  0.522
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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