STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01042PH domain protein. (1185 aa)    
Predicted Functional Partners:
CLCR_01084
CCR4-NOT core complex subunit Not4.
   
   0.905
CLCR_01074
Uncharacterized protein.
   
   0.765
CLCR_01389
ANK_REP_REGION domain-containing protein.
   
  0.563
rpn11
26S proteasome regulatory subunit rpn11.
    
  0.451
CLCR_06724
Uncharacterized protein.
    
  0.437
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
  0.437
CLCR_06684
Uncharacterized protein.
  
 
  0.436
hus5
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.420
CLCR_05489
Putative MHYT domain signaling protein.
    
  0.419
CLCR_03805
Uncharacterized protein.
    
  0.419
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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