STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01055PH domain protein. (1089 aa)    
Predicted Functional Partners:
CLCR_04607
mRNA cleavage and polyadenylation specificity factor complex subunit.
    
 0.810
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.774
smg1
Small nuclear ribonucleoprotein G.
    
  0.757
Cbp20
Nuclear cap-binding protein subunit 2.
   
  0.753
CLCR_03634
GTP-binding protein EsdC.
    
  0.746
CLCR_02903
DUF866 domain protein.
    
  0.746
CLCR_05249
DNA-directed RNA polymerases I, II, and III.
   
 
 0.740
smd2
Small nuclear ribonucleoprotein Sm D2.
    
  0.730
VPS13
Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.
    
 
 0.728
cbc1
Nuclear cap-binding protein subunit 1.
    
  0.726
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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