STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01090Putative SWI-SNF complex subunit (Snf5). (743 aa)    
Predicted Functional Partners:
ssr2
SWI/SNF and RSC complexes subunit ssr2.
   
 0.999
snf21
Chromatin structure-remodeling complex subunit snf21.
   
 0.997
ssr3
SWI/SNF and RSC complexes subunit ssr3.
   
 0.995
arp4
Actin-related protein 4; Belongs to the actin family.
   
 0.992
CLCR_04622
Uncharacterized protein.
    
 0.981
CLCR_09571
RSC complex subunit.
    
 0.981
CLCR_08053
Chromatin remodeling complex subunit; Belongs to the actin family.
    
 0.977
HHT1
Histone H3; Belongs to the histone H3 family.
    
 0.974
CLCR_09536
Putative ARID/BRIGHT domain protein (SWI1).
    
 
 0.965
CLCR_08072
Nuclear localization protein.
    
 
 0.960
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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