STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01855V-SNARE coiled-coil homology domain-containing protein. (673 aa)    
Predicted Functional Partners:
sec9
Protein transport protein sec9.
   
 0.951
sec17
Putative vesicular-fusion protein sec17 like protein.
    
 0.948
vti1
Vesicle transport v-SNARE protein vti1.
   
 0.941
sec1
Protein transport protein sec1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.936
pep12
Syntaxin pep12; Belongs to the syntaxin family.
   
 0.918
CLCR_02160
Uncharacterized protein.
    
 0.912
psy1
Syntaxin-like protein psy1.
    
 0.912
sed5
Integral membrane protein sed5.
    
 0.904
CLCR_06165
SNARE domain containing protein.
    
 0.897
CLCR_01688
SNARE domain protein.
    
 0.897
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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