STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_01928Uncharacterized protein. (514 aa)    
Predicted Functional Partners:
ileS
Isoleucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.900
CLCR_06901
Clr5 domain-containing protein.
 
      0.611
bimC
Kinesin-like protein bimC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
 
      0.521
CLCR_01818
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
  
   
 0.480
DLD1
D-lactate dehydrogenase [cytochrome], mitochondrial.
 
      0.441
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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