CLCR_02467 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_02467

Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial. (335 aa)

Predicted Functional Partners:

Aldh6a1

0.820

CLCR_01242

0.769

RPB2

0.736

RPB5

0.721

RPC10

0.721

RPB8

0.717

rpb3

0.712

CLCR_05249

0.708

rpb4

0.705

CLCR_01997

0.704

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aldh6a1	CLCR_02467	A0A1C1C6S5	A0A1C1CF39	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial.	0.820
CLCR_01242	CLCR_01997	A0A1C1CCM8	A0A1C1CDM5	CFEM domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.803
CLCR_01242	CLCR_02467	A0A1C1CCM8	A0A1C1CF39	CFEM domain-containing protein.	Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial.	0.769
CLCR_01242	CLCR_05249	A0A1C1CCM8	A0A1C1CK49	CFEM domain-containing protein.	DNA-directed RNA polymerases I, II, and III.	0.787
CLCR_01242	RPB2	A0A1C1CCM8	A0A1C1CM35	CFEM domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.878
CLCR_01242	RPB5	A0A1C1CCM8	A0A1C1CF77	CFEM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.878
CLCR_01242	RPB8	A0A1C1CCM8	A0A1C1C9C3	CFEM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.878
CLCR_01242	RPC10	A0A1C1CCM8	A0A1C1CSW8	CFEM domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.791
CLCR_01242	rpb3	A0A1C1CCM8	A0A1C1C971	CFEM domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.877
CLCR_01242	rpb4	A0A1C1CCM8	A0A1C1CK38	CFEM domain-containing protein.	DNA-directed RNA polymerase II subunit rpb4.	0.875
CLCR_01997	CLCR_01242	A0A1C1CDM5	A0A1C1CCM8	RNA_pol_L_2 domain-containing protein.	CFEM domain-containing protein.	0.803
CLCR_01997	CLCR_02467	A0A1C1CDM5	A0A1C1CF39	RNA_pol_L_2 domain-containing protein.	Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial.	0.704
CLCR_01997	CLCR_05249	A0A1C1CDM5	A0A1C1CK49	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III.	0.999
CLCR_01997	RPB2	A0A1C1CDM5	A0A1C1CM35	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CLCR_01997	RPB5	A0A1C1CDM5	A0A1C1CF77	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
CLCR_01997	RPB8	A0A1C1CDM5	A0A1C1C9C3	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CLCR_01997	RPC10	A0A1C1CDM5	A0A1C1CSW8	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
CLCR_01997	rpb3	A0A1C1CDM5	A0A1C1C971	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.999
CLCR_01997	rpb4	A0A1C1CDM5	A0A1C1CK38	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase II subunit rpb4.	0.999
CLCR_02467	Aldh6a1	A0A1C1CF39	A0A1C1C6S5	Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial.	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	0.820