STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncs1Calcium-binding protein NCS-1. (190 aa)    
Predicted Functional Partners:
cnaA
Serine/threonine-protein phosphatase.
   
 0.955
nudA
Dynein heavy chain, cytoplasmic.
    
 0.839
Tm9sf2
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
 
      0.809
CLCR_10627
Calcineurin subunit B.
   
0.808
CLCR_11110
Calmodulin; Belongs to the calmodulin family.
    
 0.783
CLCR_03884
Putative acyltransferase.
    
 0.781
CLCR_10586
Uncharacterized protein.
    
 0.758
CLCR_06356
EF-hand domain-containing protein; Belongs to the calmodulin family.
    
 0.753
CLCR_06489
Calmodulin; Belongs to the calmodulin family.
    
 0.753
CLCR_07688
DUF1348 domain protein.
    
 0.753
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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