STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pac1Double-strand-specific pac1 ribonuclease. (340 aa)    
Predicted Functional Partners:
DBP3
ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family.
   
 0.936
DBP2
ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.
   
 0.924
CLCR_03031
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.835
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.812
mrpl8
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.803
CLCR_01698
Mitochondrial 54S ribosomal protein IMG1.
  
 
 0.800
CLCR_09280
Uncharacterized protein.
  
   0.799
CLCR_01193
Mitochondrial 54S ribosomal protein YmL17/YmL30.
   
 
 0.796
MRPS16
37S ribosomal protein S16, mitochondrial.
  
 
 0.789
CLCR_01397
Putative RNA interference and protein silencing protein (Qde2).
    
 0.772
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.