STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcb1Serine palmitoyltransferase 1. (524 aa)    
Predicted Functional Partners:
lcb2
Serine palmitoyltransferase 2.
  
0.987
CLCR_08027
Serine palmitoyltransferase 2.
   
0.984
CLCR_11320
Uncharacterized protein.
    
 
 0.960
tsc10
3-ketodihydrosphingosine reductase tsc10.
     
 0.897
CLCR_04210
Putative GPI-anchor biosynthesis protein (Pig-F).
     
 0.897
pps1
CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.888
tor
Target of rapamycin; Belongs to the PI3/PI4-kinase family.
    
 0.887
CLCR_09677
Tryptophan synthase.
    
 0.866
rrp6
Exosome complex exonuclease rrp6.
    
 0.847
for
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.824
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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