STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03409C3HC4 type (RING finger) zinc finger containing protein. (537 aa)    
Predicted Functional Partners:
KEX1-2
Protease KEX1; Belongs to the peptidase S8 family.
    
  0.771
CLCR_00220
Putative ubiquitin-protein ligase Ufd4.
     
 0.711
CLCR_06167
Ubiquitin-like domain-containing protein.
    
  0.694
UBI4
Polyubiquitin.
    
  0.694
ubc1
Ubiquitin-conjugating enzyme E2 1; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.676
CLCR_08814
BZIP domain-containing protein.
    
  0.660
CLCR_10902
Ubiquitin-40S ribosomal protein S27a.
    
  0.660
spm2
Ubiquitin-conjugating enzyme spm2.
   
  0.658
CLCR_04354
Putative Polyubiquitin.
    
 0.646
ubi2
Ubiquitin-60S ribosomal protein L40.
    
 0.646
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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