STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03567Uncharacterized protein. (389 aa)    
Predicted Functional Partners:
CLCR_03422
60S ribosome biogenesis protein Rrp14.
   
   0.789
cbf5
Centromere/microtubule-binding protein cbf5.
   
   0.736
mak16
Protein MAK16; Belongs to the MAK16 family.
   
  
 0.720
fcf2
rRNA-processing protein fcf2.
   
  
 0.682
ebp2
Putative rRNA-processing protein ebp2.
   
    0.658
rrp15
Ribosomal RNA-processing protein 15.
   
   0.619
CLCR_01067
Utp14 protein.
   
    0.619
CLCR_05885
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.606
puf6
Pumilio like proteiny domain family member 6.
   
  
 0.603
CLCR_10478
rRNA-processing protein EFG1.
   
    0.599
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.