STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03853Putative transcriptional corepressor Cyc8. (817 aa)    
Predicted Functional Partners:
CLCR_06841
WD repeat-containing protein.
    
 0.990
CLCR_10137
Putative RNA polymerase-associated protein LEO1.
    
 0.951
CLCR_04344
WD_REPEATS_REGION domain-containing protein.
    
 0.916
CLCR_09957
WD repeat domain 5B.
    
 0.916
rpl3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
 
 
   0.914
CLCR_09922
BZIP transcription factor.
    
 0.893
klpA
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.886
CLCR_08809
Uncharacterized protein.
    
 0.886
swd1
Set1 complex component swd1.
    
 0.864
CLCR_03519
Uncharacterized protein.
    
 0.857
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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