STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03999FAD linked oxidase domain protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family. (536 aa)    
Predicted Functional Partners:
GDE1
Glycerophosphodiester phosphodiesterase GDE1.
    
 0.812
NIAD
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.800
CLCR_01026
Putative HEAT repeat protein (DRIM).
   
  0.640
CLCR_00708
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.600
CLCR_06193
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
    
  0.600
NEP1
Ribosomal RNA small subunit methyltransferase NEP1.
    
  0.600
sof1
Protein sof1.
    
  0.600
CLCR_04287
CBF domain-containing protein.
    
  0.600
rps6b
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.600
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
  0.599
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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