STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04241Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.997
RPS2
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.997
rps6b
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.997
CLCR_00708
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.996
RPS4
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.996
CLCR_11219
40S ribosomal protein S29.
   
 0.996
CLCR_00525
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.996
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 0.996
RPS18
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
   
 0.996
rps19
40S ribosomal protein S19.
   
 0.996
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.