STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPL1Sphingosine-1-phosphate lyase. (585 aa)    
Predicted Functional Partners:
CLCR_02982
PAP2 domain protein.
    
 0.957
LCB4
Sphingoid long chain base kinase 4.
    
 0.914
gatA
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.871
CLCR_06629
Histidine biosynthesis trifunctional protein.
    
 0.832
panC
Pantothenate synthetase.
  
 
 0.821
CLCR_09677
Tryptophan synthase.
    
 0.819
NIAD
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
   
 0.793
MNN11
Putative alpha-1,6-mannosyltransferase MNN11.
 
  
   0.786
CLCR_02057
Heme/steroid binding protein; Belongs to the cytochrome b5 family.
   
  0.785
glt1
Putative glutamate synthase [NADPH].
     
 0.748
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.