STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04018Homeobox domain-containing protein. (522 aa)    
Predicted Functional Partners:
CLCR_07560
MADS-box domain-containing protein.
    
 0.916
CLCR_02840
RSC complex subunit Sfh1.
    
 0.656
CLCR_02798
Fork-head domain-containing protein.
   
 
 0.619
SREP
GATA factor SREP.
    
 0.598
CLCR_01553
Putative clock controled protein (Ccg-8).
    
 0.598
CLCR_01133
GATA-binding protein, other eukaryote.
    
 0.598
CLCR_01927
Sexual development transcription factor NsdD.
    
 0.598
CLCR_07068
Cutinase protein palindrome-binding protein.
    
 0.598
CLCR_08054
Uncharacterized protein.
    
 0.598
areA
Nitrogen regulatory protein areA.
    
 0.598
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.