STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03810Poly(A) polymerase. (1279 aa)    
Predicted Functional Partners:
pab1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.777
tif451
Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.
    
 0.707
tif1
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
    
 0.675
fal1
ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.
    
 0.671
rad3
Protein kinase rad3; Belongs to the PI3/PI4-kinase family.
    
  0.666
CLCR_08497
Uncharacterized protein.
    
 0.603
CLCR_11381
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.596
CLCR_10756
Uncharacterized protein.
    
  0.596
CLCR_04607
mRNA cleavage and polyadenylation specificity factor complex subunit.
   
 
 0.578
pho2
4-nitrophenylphosphatase.
     
 0.515
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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