STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04021Putative nickel transport protein. (567 aa)    
Predicted Functional Partners:
CLCR_09683
Terminal deoxynucleotidyl transferase.
 
      0.806
apm2
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
  0.662
CLCR_04540
RasGEF domain containing protein.
    
  0.650
CLCR_01417
Ubiquitin carboxyl-terminal hydrolase.
    
  0.629
CLCR_06661
Ubiquitin C-terminal hydrolase family protein.
    
  0.629
CLCR_01866
ENTH domain protein.
    
 0.601
ure1
Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.597
CLCR_07717
Uncharacterized protein.
     
 0.597
cdc48
Cell division control protein 48; Belongs to the AAA ATPase family.
    
  0.565
CLCR_04434
Uncharacterized protein.
    
  0.565
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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