STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_03896Uncharacterized protein. (766 aa)    
Predicted Functional Partners:
CLCR_06724
Uncharacterized protein.
    
 0.857
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 0.857
HHT1
Histone H3; Belongs to the histone H3 family.
    
 0.818
CLCR_02433
GRF zinc finger domain-containing protein.
    
 0.818
CLCR_07668
Uncharacterized protein.
    
 0.818
CLCR_10124
Tat pathway signal sequence.
    
 0.818
CLCR_05264
Ubiquitin-like domain-containing protein.
    
  0.718
htz1
Histone H2A; Belongs to the histone H2A family.
    
  0.693
cul3b
Cullin-3-B; Belongs to the cullin family.
    
 0.687
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.687
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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