STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04593Putative RING and UBP finger domain protein. (820 aa)    
Predicted Functional Partners:
UBI4
Polyubiquitin.
 
  
 0.939
ubi2
Ubiquitin-60S ribosomal protein L40.
 
   
  0.864
CLCR_10902
Ubiquitin-40S ribosomal protein S27a.
 
  
  0.840
CLCR_06167
Ubiquitin-like domain-containing protein.
    
 0.765
CLCR_08814
BZIP domain-containing protein.
    
  0.746
CLCR_05264
Ubiquitin-like domain-containing protein.
    
 0.737
CLCR_03284
SAM domain family protein.
    
  0.731
CLCR_07167
Putative ubiquitin-like protein DskB.
    
  0.731
rhp23
UV excision repair protein rhp23.
    
  0.731
rasA
Ras-like protein.
    
  0.687
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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